Compute Pathway activities with decoupleR — compute_activities • spacedeconv

Compute Pathway activities with decoupleR

Usage

compute_activities(
  spe,
  reference,
  method = "wmean",
  assay = "cpm",
  statistic = NULL,
  ...
)

Arguments

spe: SpatialExperiment
reference: decoupleR reference
method: calculation method to use
assay: which assay to use
statistic: select a sub results in case methods produce mutliple ones
...: further arguments passed to the methods